PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G052800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 692aa    MW: 78793.9 Da    PI: 6.0719
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G052800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.84.8e-1570146190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fYn ++ e+GF +r + +      +++++++ vCs+egk+e +++         a+ +t+Cka++++++++d+ w++++++ +HnH+l
  Sobic.002G052800.1.p  70 DFYNLHSWELGFGIRCNMTVD----KSVVSQDIVCSCEGKPELSNT---------ASAQTDCKAMIRLHRSDDSCWYIQEFRGDHNHPL 145
                           6**************997554....589************999755.........599******************************9 PP

                  FAR1  90 a 90 
                           +
  Sobic.002G052800.1.p 146 S 146
                           6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1170146IPR004330FAR1 DNA binding domain
PfamPF105514.5E-27261354IPR018289MULE transposase domain
PROSITE profilePS509669.792544580IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MAGGPGAGGG GGHGHGERFC RGSVPSERAP KRGGVSAYEQ SLKEYVDRMS IVVIRPSVGM  60
SFDSRAEAYD FYNLHSWELG FGIRCNMTVD KSVVSQDIVC SCEGKPELSN TASAQTDCKA  120
MIRLHRSDDS CWYIQEFRGD HNHPLSGICS ENFCWPSHNH LKPYTKNLVR RLRDDNVELS  180
KKCQSIYEYF WGMECKDISL DLSDIDSDKT IELFDDFGSL RRDDPSFMFC VELDDIDNQF  240
NTVLWTNGRS RTQYAHFGDT VTFDTTYRTN LYGLPFILFV GVNNHHQSIL LGGALMRRKT  300
VESFKWLFRE FVILMGGKAP STILTDRCHE MEVAIQEELP ETIHRWCKMH VLNNEHEFLG  360
PICLKMSGFK DDFQKIIDGM LTVREFECAW QHLLDKYNLH DNAFLSQIYD SRHKWANPYL  420
KEKFCTKQTS TQRNESAENM FKGYVPLNRS INMFVRHYNK LQSDLNSKES SEENRSRKRP  480
RFISKGLPIM EHAAKIYTRA MFEMFEGMIS QSGSYVVHEK EKGKAYLARN IRSDQQESWS  540
QVEFEVIIRA EDGAVVCECG FWEHMGMPCC HAVKVMIHMG MQEIPAGNIV KRWTMDARDT  600
VPVHLIGNDR AAENSKSYRT SELFIAGIKF VKSGSRSDQA FEGAMAVLDQ IKQELSELGE  660
DEDVSELSEQ SSISAATTDD ATSTLSGSET D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459424.10.0hypothetical protein SORBIDRAFT_02g004433
TrEMBLC5XB110.0C5XB11_SORBI; Putative uncharacterized protein Sb02g004433
STRINGSb02g004433.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-72FAR1-related sequence 5